Package: tsmp 0.5.0

Francisco Bischoff

tsmp: Time Series with Matrix Profile

A toolkit implementing the Matrix Profile concept that was created by CS-UCR <http://www.cs.ucr.edu/~eamonn/MatrixProfile.html>.

Authors:Francisco Bischoff [aut, cre], Michael Yeh [res, ccp, ctb], Diego Silva [res, ccp, ctb], Yan Zhu [res, ccp, ctb], Hoang Dau [res, ccp, ctb], Michele Linardi [res, ccp, ctb]

tsmp_0.5.0.tar.gz
tsmp_0.5.0.zip(r-4.7-any)tsmp_0.5.0.zip(r-4.6-any)tsmp_0.5.0.zip(r-4.5-any)
tsmp_0.5.0.tgz(r-4.6-any)tsmp_0.5.0.tgz(r-4.5-any)
tsmp_0.5.0.tar.gz(r-4.7-any)tsmp_0.5.0.tar.gz(r-4.6-any)
tsmp_0.5.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
tsmp/json (API)

# Install 'tsmp' in R:

install.packages('tsmp', repos = c('https://matrix-profile-foundation.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/matrix-profile-foundation/tsmp/issues

Datasets:

motifs_discords_small - Just a synthetic dataset for testing
mp_fluss_data - Original data used in the FLUSS paper
mp_gait_data - Original data used in the Time Series Chain demo
mp_meat_data - Original data used in the Salient Subsequences demo
mp_test_data - Original data used in the STDS demo
mp_toy_data - Original data used in the mSTAMP demo

On CRAN:

algorithm matrix-profile motif-search time-series

7.49 score 76 stars 1 packages 134 scripts 421 downloads 1 mentions 62 exports 7 dependencies

Last updated from:f919c34e19. Checks:7 NOTE, 2 OK. Indexed: yes.

Target	Result	Time
linux-devel	NOTE	157
source / vignettes	OK	192
linux-release	NOTE	134
macos-release	NOTE	116
macos-oldrel	NOTE	143
windows-devel	NOTE	109
windows-release	NOTE	104
windows-oldrel	NOTE	97
wasm-release	OK	110

Exports:%>%%T>%analyze as_ts_data as.arccount as.chain as.discord as.fluss as.matrixprofile as.motif as.multimatrixprofile as.multimotif as.pmp as.salient as.valmod av_apply av_complexity av_hardlimit_artifact av_motion_artifact av_stop_word av_zerocrossing compute convert_data discords dist_profile find_chains find_discord find_motif find_snippet floss floss_cac floss_extract fluss fluss_cac fluss_extract fluss_score get_data ipaa min_mp_idx motifs mpdist mstomp mstomp_par paa plot_arcs pmp pmp_upper_bound read_json remove_class salient_mds salient_score salient_subsequences sdts_predict sdts_score sdts_train set_data simple_fast stompi_update tsmp valmod visualize write_json

Dependencies:backports checkmate glue magrittr matrixprofiler Rcpp RcppThread

Time Series with Matrix Profile

Matrix Profile | Why should you care? | Performance on an Intel(R) Core(TM) i9-13900K using a random walk dataset | Further readings

Rendered frompress.Rmdusingknitr::rmarkdown

Last update: 2026-10-14
Started: 2018-09-16

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Matrix Profile for R	tsmp-package
Runs an appropriate workflow based on the parameters passed in.	analyze
Standardize Time Series Input Data	as_ts_data convert_data
Convert a TSMP object into another if possible	as.arccount as.chain as.discord as.fluss as.matrixprofile as.motif as.multimatrixprofile as.multimotif as.pmp as.salient as.valmod
Corrects the matrix profile using an annotation vector	av_apply
Computes the annotation vector that favors complexity	av_complexity
Computes the annotation vector that suppresses hard-limited artifacts	av_hardlimit_artifact
Computes the annotation vector that suppresses motion artifacts	av_motion_artifact
Computes the annotation vector that suppresses stop-word motifs	av_stop_word
Computes the annotation vector that favors number of zero crossing	av_zerocrossing
Computes the Matrix Profile or Pan-Matrix Profile	compute
Search for Discord	discords
Calculates the distance profile using MASS algorithms	dist_profile
Find Time Series Chains	find_chains
Search for Discord	find_discord find_discord.MatrixProfile find_discord.PMP
Search for Motifs	find_motif find_motif.MatrixProfile find_motif.MultiMatrixProfile find_motif.PMP
Time Series Snippets: A New Primitive for Time Series Data Mining	find_snippet
Fast Low-cost Online Semantic Segmentation (FLOSS)	floss
FLOSS - Corrected Arc Counts	floss_cac
FLOSS - Extract Segments	floss_extract
Fast Low-cost Unipotent Semantic Segmentation (FLUSS)	fluss
FLUSS - Corrected Arc Counts	fluss_cac
FLUSS - Extract Segments	fluss_extract
FLUSS - Prediction score calculation	fluss_score
Get the data included in a TSMP object, if any.	get_data
Inverse Piecewise Aggregate Approximation	ipaa
Get index of the minimum value from a matrix profile and its nearest neighbor	min_mp_idx
Search for Motifs	motifs
Just a synthetic dataset for testing	motifs_discords_small
Original data used in the FLUSS paper	mp_fluss_data
Original data used in the Time Series Chain demo	mp_gait_data
Original data used in the Salient Subsequences demo	mp_meat_data
Original data used in the STDS demo	mp_test_data
Original data used in the mSTAMP demo	mp_toy_data
MPdist - Distance between Time Series using Matrix Profile	mpdist
Multivariate STOMP algorithm Parallel version	mstomp mstomp_par
Piecewise Aggregate Approximation	paa
Plot a TSMP object	plot plot.ArcCount plot.Chain plot.Discord plot.Floss plot.Fluss plot.MatrixProfile plot.Motif plot.MultiMatrixProfile plot.MultiMotif plot.PMP plot.Salient plot.SimpleMatrixProfile plot.Snippet plot.Valmod
Plot arcs between indexes of a Profile Index	plot_arcs
Pan-Matrix Profile	pmp
Pan Matrix Profile upper bound	pmp_upper_bound
Read TSMP object from JSON file.	read_json
Remove a 'TSMP' class from an object	remove_class
Convert salient sequences into MDS space	salient_mds
Computes the F-Score of salient algorithm.	salient_score
Framework for retrieve salient subsequences from a dataset	salient_subsequences
Framework for Scalable Dictionary learning for Time Series (SDTS) prediction function	sdts_predict
Computes the F-Score of a SDTS prediction	sdts_score
Framework for Scalable Dictionary learning for Time Series (SDTS) training function	sdts_train
Set/changes the data included in TSMP object.	set_data
Compute the join similarity for Sound data	simple_fast
Real-time STOMP algorithm	stompi_update
Computes the Matrix Profile and Profile Index	tsmp
Variable Length Motif Discovery	valmod
Plots an object generated from one of the algorithms. In some cases multiple plots will be generated	visualize
Write a TSMP object to JSON file.	write_json write_json.MatrixProfile write_json.PMP